MGYG000319451

Taxonomy

Mediterraneibacter caccogallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter caccogallinarum

Cluster representative

MGYG000309508

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309508 on MGnify
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Annotations

MGYG000319451’s cluster representative genome MGYG000309508 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309508 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319451 Copy API Endpoint

MGYG000319451’s cluster representative (MGYG000309508) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309508’s sequence. Because MGYG000319451 has been clustered with MGYG000309508 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319451.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309508

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Containment	Sample accession	Animal accession	Treatment
0.20	SAMEA10455488	SAMEA112905275	Prebiotic
0.20	SAMEA7571813	SAMEA112905264	Prebiotic
0.20	SAMEA7571801	SAMEA112904766	Probiotic
0.20	SAMEA9449854	SAMEA112905061	Prebiotic
0.20	SAMEA7571838	SAMEA112905090	Control