HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000319140

Details for MGYG000319140, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lactobacillus gallinarum Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus gallinarum
Cluster representative

MGYG000314949

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314949 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319140’s cluster representative genome MGYG000314949 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314949 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319140 Copy API Endpoint
Samples containing this genome

MGYG000319140’s cluster representative (MGYG000314949) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314949’s sequence. Because MGYG000319140 has been clustered with MGYG000314949 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319140.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314949

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Containment Sample accession Animal accession Treatment
0.25 SAMEA9449858 Probiotic
0.24 SAMEA7697596 Prebiotic
0.24 SAMEA7571810 Prebiotic
0.24 SAMEA9449904 Control
0.24 SAMEA9449846 Prebiotic
0.24 SAMEA7571787 Probiotic
0.23 SAMEA10129982 Prebiotic
0.23 SAMEA9449958 Probiotic
0.23 SAMEA10130040 Prebiotic
0.23 SAMEA7571840 Probiotic