HoloFood Data Portal

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MGYG000318752

Details for MGYG000318752, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Galligastranaerophilus Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > Galligastranaerophilus
Cluster representative

MGYG000315705

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315705 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318752’s cluster representative genome MGYG000315705 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315705 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318752 Copy API Endpoint
Samples containing this genome

MGYG000318752’s cluster representative (MGYG000315705) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315705’s sequence. Because MGYG000318752 has been clustered with MGYG000315705 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318752.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315705

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Containment Sample accession Animal accession Treatment
0.99 SAMEA9449916 Probiotic
0.99 SAMEA7025283 Control
0.96 SAMEA10105056 Prebiotic
0.95 SAMEA10145595 Control
0.93 SAMEA9449963 Probiotic
0.93 SAMEA10105047 Control
0.91 SAMEA10105061 Control
0.90 SAMEA7571768 Control
0.83 SAMEA7697630 Control
0.82 SAMEA10105072 Prebiotic