HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000318293

Details for MGYG000318293, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatomorpha intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Scatomorpha > Scatomorpha intestinigallinarum
Cluster representative

MGYG000319247

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319247 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318293’s cluster representative genome MGYG000319247 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319247 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318293 Copy API Endpoint
Samples containing this genome

MGYG000318293’s cluster representative (MGYG000319247) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319247’s sequence. Because MGYG000318293 has been clustered with MGYG000319247 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318293.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319247

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Containment Sample accession Animal accession Treatment
0.26 SAMEA10105009 Prebiotic
0.26 SAMEA10455497 Probiotic
0.25 SAMEA10130059 Control
0.25 SAMEA7571853 Prebiotic
0.25 SAMEA10145597 Control
0.25 SAMEA7571808 Control
0.24 SAMEA7697599 Control
0.24 SAMEA10105030 Prebiotic
0.24 SAMEA7571775 Control
0.23 SAMEA9449907 Prebiotic