MGYG000318016

Taxonomy

Alistipes cottocaccae Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes cottocaccae

Cluster representative

MGYG000313561

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313561 on MGnify
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Annotations

MGYG000318016’s cluster representative genome MGYG000313561 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313561 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318016 Copy API Endpoint

MGYG000318016’s cluster representative (MGYG000313561) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313561’s sequence. Because MGYG000318016 has been clustered with MGYG000313561 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318016.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313561

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571795	SAMEA112905322	Prebiotic
1.00	SAMEA10104992	SAMEA112905146	Prebiotic
1.00	SAMEA14099425	SAMEA112905180	Prebiotic
1.00	SAMEA10145585	SAMEA112905186	Control
1.00	SAMEA7571806	SAMEA112904804	Control
1.00	SAMEA10104968	SAMEA112905092	Prebiotic
1.00	SAMEA10159263	SAMEA112905109	Prebiotic
1.00	SAMEA7571814	SAMEA112904917	Prebiotic
1.00	SAMEA10145583	SAMEA112904929	Control
1.00	SAMEA10104972	SAMEA112905094	Probiotic