HoloFood Data Portal

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MGYG000317366

Details for MGYG000317366, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000317058

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317058 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317366’s cluster representative genome MGYG000317058 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317058 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317366 Copy API Endpoint
Samples containing this genome

MGYG000317366’s cluster representative (MGYG000317058) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317058’s sequence. Because MGYG000317366 has been clustered with MGYG000317058 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317366.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317058

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Containment Sample accession Animal accession Treatment
0.22 SAMEA9449852 Prebiotic
0.22 SAMEA7571779 Prebiotic
0.22 SAMEA10104977 Control
0.22 SAMEA7697637 Prebiotic
0.22 SAMEA7697599 Control
0.22 SAMEA9449956 Probiotic
0.22 SAMEA7571793 Prebiotic
0.22 SAMEA9449944 Control
0.22 SAMEA10145556 Control
0.22 SAMEA10105009 Prebiotic