MGYG000317256

Taxonomy

Caccovivens sp905195085 Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens > Caccovivens sp905195085

Cluster representative

MGYG000320029

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320029 on MGnify
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Annotations

MGYG000317256’s cluster representative genome MGYG000320029 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320029 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317256 Copy API Endpoint

MGYG000317256’s cluster representative (MGYG000320029) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320029’s sequence. Because MGYG000317256 has been clustered with MGYG000320029 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317256.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320029

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449938	SAMEA112904995	Prebiotic
1.00	SAMEA10455488	SAMEA112905275	Prebiotic
1.00	SAMEA10104910	SAMEA112904813	Probiotic
1.00	SAMEA9449940	SAMEA112905148	Prebiotic
1.00	SAMEA7571841	SAMEA112904773	Probiotic
1.00	SAMEA10105032	SAMEA112904833	Control
1.00	SAMEA7697620	SAMEA112904920	Prebiotic
1.00	SAMEA7697592	SAMEA112904737	Control
1.00	SAMEA7697623	SAMEA112905102	Probiotic
1.00	SAMEA10105037	SAMEA112904745	Probiotic