HoloFood Data Portal

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MGYG000317009

Details for MGYG000317009, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
RUG14156 Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > RUG14156
Cluster representative

MGYG000317141

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317141 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317009’s cluster representative genome MGYG000317141 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317141 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317009 Copy API Endpoint
Samples containing this genome

MGYG000317009’s cluster representative (MGYG000317141) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317141’s sequence. Because MGYG000317009 has been clustered with MGYG000317141 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317009.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317141

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Containment Sample accession Animal accession Treatment
0.97 SAMEA10145601 Control
0.97 SAMEA10104974 Probiotic
0.97 SAMEA10104945 Probiotic
0.97 SAMEA7697592 Control
0.97 SAMEA10104929 Prebiotic
0.97 SAMEA9449850 Control
0.97 SAMEA10104993 Prebiotic
0.97 SAMEA10104973 Probiotic
0.96 SAMEA7697608 Control
0.96 SAMEA10104972 Probiotic