HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000316207

Details for MGYG000316207, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus sp900604335 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus > Butyricicoccus sp900604335
Cluster representative

MGYG000316758

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316758 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316207’s cluster representative genome MGYG000316758 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316758 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316207 Copy API Endpoint
Samples containing this genome

MGYG000316207’s cluster representative (MGYG000316758) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316758’s sequence. Because MGYG000316207 has been clustered with MGYG000316758 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316207.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316758

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Containment Sample accession Animal accession Treatment
0.32 SAMEA10105047 Control
0.31 SAMEA9449908 Prebiotic
0.31 SAMEA10159260 Control
0.30 SAMEA9449834 Probiotic
0.30 SAMEA7571808 Control
0.29 SAMEA7571767 Control
0.29 SAMEA10105003 Prebiotic
0.28 SAMEA10104934 Prebiotic
0.28 SAMEA10104954 Control
0.28 SAMEA7571788 Control