MGYG000316065

Taxonomy

Caccovivens sp905195085 Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens > Caccovivens sp905195085

Cluster representative

MGYG000320029

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320029 on MGnify
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Annotations

MGYG000316065’s cluster representative genome MGYG000320029 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320029 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316065 Copy API Endpoint

MGYG000316065’s cluster representative (MGYG000320029) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320029’s sequence. Because MGYG000316065 has been clustered with MGYG000320029 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316065.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320029

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10104981	SAMEA112905362	Probiotic
1.00	SAMEA9449905	SAMEA112905226	Prebiotic
1.00	SAMEA9449935	SAMEA112905305	Control
1.00	SAMEA10105045	SAMEA112905221	Control
1.00	SAMEA10455495	SAMEA112904921	Control
0.99	SAMEA7025234	SAMEA112905098	Control
0.99	SAMEA7697617	SAMEA112905296	Prebiotic
0.99	SAMEA7697590	SAMEA112905010	Control
0.99	SAMEA9449907	SAMEA112905341	Prebiotic
0.99	SAMEA10105039	SAMEA112905019	Probiotic