HoloFood Data Portal

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MGYG000316006

Details for MGYG000316006, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000315312

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315312 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316006’s cluster representative genome MGYG000315312 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315312 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316006 Copy API Endpoint
Samples containing this genome

MGYG000316006’s cluster representative (MGYG000315312) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315312’s sequence. Because MGYG000316006 has been clustered with MGYG000315312 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316006.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315312

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Containment Sample accession Animal accession Treatment
0.89 SAMEA7025283 Control
0.88 SAMEA7571804 Prebiotic
0.88 SAMEA9449884 Control
0.88 SAMEA7697637 Prebiotic
0.88 SAMEA7571848 Prebiotic
0.88 SAMEA7571797 Control
0.88 SAMEA7025277 Control
0.88 SAMEA7697600 Prebiotic
0.88 SAMEA10145560 Control
0.88 SAMEA7697623 Probiotic