HoloFood Data Portal

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MGYG000314795

Details for MGYG000314795, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccopulliclostridium gallistercoris Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccopulliclostridium > Caccopulliclostridium gallistercoris
Cluster representative

MGYG000317109

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317109 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314795’s cluster representative genome MGYG000317109 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317109 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314795 Copy API Endpoint
Samples containing this genome

MGYG000314795’s cluster representative (MGYG000317109) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317109’s sequence. Because MGYG000314795 has been clustered with MGYG000317109 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314795.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317109

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Containment Sample accession Animal accession Treatment
0.22 SAMEA10145572 Control
0.22 SAMEA10145587 Control
0.22 SAMEA10159246 Prebiotic
0.22 SAMEA7571777 Control
0.22 SAMEA10104984 Control
0.21 SAMEA9449951 Prebiotic
0.21 SAMEA10105021 Probiotic
0.21 SAMEA10159245 Prebiotic
0.20 SAMEA7571839 Control