MGYG000314176

Taxonomy

CAG-267 sp001917135 Bacteria > Proteobacteria > Alphaproteobacteria > RF32 > CAG-239 > CAG-267 > CAG-267 sp001917135

Cluster representative

MGYG000313949

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313949 on MGnify
 Show other genomes in cluster

Annotations

MGYG000314176’s cluster representative genome MGYG000313949 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313949 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314176 Copy API Endpoint

MGYG000314176’s cluster representative (MGYG000313949) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313949’s sequence. Because MGYG000314176 has been clustered with MGYG000313949 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314176.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313949

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025281	SAMEA112904979	Probiotic
1.00	SAMEA10105019	SAMEA112905196	Control
1.00	SAMEA10105051	SAMEA112904756	Control
1.00	SAMEA10105056	SAMEA112904738	Prebiotic
1.00	SAMEA10105046	SAMEA112904997	Control
1.00	SAMEA9449949	SAMEA112904930	Prebiotic
1.00	SAMEA10105033	SAMEA112904789	Prebiotic
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA10145587	SAMEA112905124	Control
0.99	SAMEA7025275	SAMEA112905332	Probiotic