HoloFood Data Portal

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MGYG000314084

Details for MGYG000314084, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-448 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > CAG-272 > CAG-448
Cluster representative

MGYG000310568

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310568 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314084’s cluster representative genome MGYG000310568 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310568 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314084 Copy API Endpoint
Samples containing this genome

MGYG000314084’s cluster representative (MGYG000310568) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310568’s sequence. Because MGYG000314084 has been clustered with MGYG000310568 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314084.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310568

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Containment Sample accession Animal accession Treatment
0.32 SAMEA7571764 Control
0.31 SAMEA9449874 Prebiotic
0.31 SAMEA10454442 Probiotic
0.30 SAMEA10455484 Prebiotic
0.30 SAMEA9449890 Probiotic
0.29 SAMEA10145564 Control
0.29 SAMEA7025240 Probiotic
0.26 SAMEA7025241 Probiotic
0.26 SAMEA7571772 Prebiotic
0.24 SAMEA10159263 Prebiotic