HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000314017

Details for MGYG000314017, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Helicobacter_D pullorum Bacteria > Campylobacterota > Campylobacteria > Campylobacterales > Helicobacteraceae > Helicobacter_D > Helicobacter_D pullorum
Cluster representative

MGYG000315584

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315584 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314017’s cluster representative genome MGYG000315584 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315584 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314017 Copy API Endpoint
Samples containing this genome

MGYG000314017’s cluster representative (MGYG000315584) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315584’s sequence. Because MGYG000314017 has been clustered with MGYG000315584 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314017.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315584

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.41 SAMEA7025256 Prebiotic
0.37 SAMEA7571765 Probiotic
0.37 SAMEA10105038 Probiotic
0.36 SAMEA7571810 Prebiotic
0.35 SAMEA9449917 Probiotic
0.34 SAMEA9449923 Probiotic
0.32 SAMEA7697575 Control
0.32 SAMEA7571788 Control
0.31 SAMEA7571858 Probiotic
0.30 SAMEA10130059 Control