HoloFood Data Portal

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MGYG000313795

Details for MGYG000313795, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-269 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-269
Cluster representative

MGYG000309321

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309321 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313795’s cluster representative genome MGYG000309321 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309321 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313795 Copy API Endpoint
Samples containing this genome

MGYG000313795’s cluster representative (MGYG000309321) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309321’s sequence. Because MGYG000313795 has been clustered with MGYG000309321 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313795.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309321

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025268 Control
0.99 SAMEA10105060 Control
0.96 SAMEA7025241 Probiotic
0.96 SAMEA7571820 Probiotic
0.96 SAMEA10145597 Control
0.94 SAMEA7025282 Control
0.90 SAMEA10105021 Probiotic
0.84 SAMEA7722478 Control
0.83 SAMEA7025285 Control
0.82 SAMEA10105056 Prebiotic