MGYG000313654

Taxonomy

Campylobacter_D coli Bacteria > Campylobacterota > Campylobacteria > Campylobacterales > Campylobacteraceae > Campylobacter_D > Campylobacter_D coli

Cluster representative

MGYG000316706

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316706 on MGnify
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Annotations

MGYG000313654’s cluster representative genome MGYG000316706 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316706 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313654 Copy API Endpoint

MGYG000313654’s cluster representative (MGYG000316706) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316706’s sequence. Because MGYG000313654 has been clustered with MGYG000316706 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313654.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316706

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA7571822	SAMEA112904992	Probiotic
0.21	SAMEA7571785	SAMEA112904982	Probiotic
0.21	SAMEA10105028	SAMEA112905044	Probiotic
0.21	SAMEA10105051	SAMEA112904756	Control
0.21	SAMEA10130101	SAMEA112904762	Probiotic
0.21	SAMEA7571867	SAMEA112905129	Control