HoloFood Data Portal

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MGYG000313186

Details for MGYG000313186, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecalibacterium gallistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Faecalibacterium > Faecalibacterium gallistercoris
Cluster representative

MGYG000308025

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308025 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313186’s cluster representative genome MGYG000308025 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308025 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313186 Copy API Endpoint
Samples containing this genome

MGYG000313186’s cluster representative (MGYG000308025) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308025’s sequence. Because MGYG000313186 has been clustered with MGYG000308025 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313186.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308025

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Containment Sample accession Animal accession Treatment
0.90 SAMEA10145583 Control
0.90 SAMEA10105030 Prebiotic
0.90 SAMEA9449894 Probiotic
0.90 SAMEA7571801 Probiotic
0.90 SAMEA7697613 Prebiotic
0.90 SAMEA10145560 Control
0.89 SAMEA7571767 Control
0.89 SAMEA9449836 Probiotic
0.89 SAMEA7697601 Prebiotic
0.89 SAMEA9449833 Probiotic