HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000312379

Details for MGYG000312379, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ornithoclostridium excrementipullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA3700 > Ornithoclostridium > Ornithoclostridium excrementipullorum
Cluster representative

MGYG000316631

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316631 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312379’s cluster representative genome MGYG000316631 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316631 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312379 Copy API Endpoint
Samples containing this genome

MGYG000312379’s cluster representative (MGYG000316631) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316631’s sequence. Because MGYG000312379 has been clustered with MGYG000316631 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312379.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316631

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Containment Sample accession Animal accession Treatment
0.35 SAMEA7571843 Prebiotic
0.35 SAMEA10159266 Control
0.34 SAMEA7571833 Prebiotic
0.34 SAMEA7571802 Control
0.33 SAMEA7571775 Control
0.33 SAMEA10455488 Prebiotic
0.32 SAMEA9449849 Probiotic
0.31 SAMEA10105056 Prebiotic
0.31 SAMEA7571824 Probiotic
0.31 SAMEA9449856 Prebiotic