MGYG000312196

Taxonomy

An92 sp019114165 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > An92 > An92 sp019114165

Cluster representative

MGYG000319010

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319010 on MGnify
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Annotations

MGYG000312196’s cluster representative genome MGYG000319010 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319010 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312196 Copy API Endpoint

MGYG000312196’s cluster representative (MGYG000319010) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319010’s sequence. Because MGYG000312196 has been clustered with MGYG000319010 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312196.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319010

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Containment	Sample accession	Animal accession	Treatment
0.25	SAMEA7697616	SAMEA112905295	Probiotic
0.24	SAMEA10105072	SAMEA112905070	Prebiotic
0.24	SAMEA10105046	SAMEA112904997	Control
0.24	SAMEA7697600	SAMEA112905286	Prebiotic
0.24	SAMEA7025283	SAMEA112904873	Control
0.24	SAMEA7571849	SAMEA112905188	Prebiotic
0.23	SAMEA7722473	SAMEA112905065	Prebiotic
0.23	SAMEA10104981	SAMEA112905362	Probiotic
0.23	SAMEA10105013	SAMEA112905048	Control
0.22	SAMEA7025270	SAMEA112904830	Probiotic