HoloFood Data Portal

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MGYG000312141

Details for MGYG000312141, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Dysosmobacter Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Dysosmobacter
Cluster representative

MGYG000316966

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316966 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312141’s cluster representative genome MGYG000316966 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316966 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312141 Copy API Endpoint
Samples containing this genome

MGYG000312141’s cluster representative (MGYG000316966) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316966’s sequence. Because MGYG000312141 has been clustered with MGYG000316966 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312141.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316966

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Containment Sample accession Animal accession Treatment
0.23 SAMEA7697600 Prebiotic
0.23 SAMEA7697628 Control
0.23 SAMEA7571772 Prebiotic
0.23 SAMEA7571819 Probiotic
0.22 SAMEA10105008 Control
0.22 SAMEA9449933 Prebiotic
0.22 SAMEA10104974 Probiotic
0.21 SAMEA9449892 Probiotic
0.20 SAMEA10104987 Control
0.20 SAMEA7697611 Prebiotic