HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311845

Details for MGYG000311845, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus sp900604335 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus > Butyricicoccus sp900604335
Cluster representative

MGYG000316758

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316758 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311845’s cluster representative genome MGYG000316758 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316758 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311845 Copy API Endpoint
Samples containing this genome

MGYG000311845’s cluster representative (MGYG000316758) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316758’s sequence. Because MGYG000311845 has been clustered with MGYG000316758 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311845.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316758

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Containment Sample accession Animal accession Treatment
0.68 SAMEA9449894 Probiotic
0.68 SAMEA10145556 Control
0.68 SAMEA9449856 Prebiotic
0.67 SAMEA10455500 Control
0.67 SAMEA10159266 Control
0.66 SAMEA9449854 Prebiotic
0.65 SAMEA10145568 Control
0.64 SAMEA10105021 Probiotic
0.64 SAMEA10104915 Control
0.64 SAMEA9449896 Prebiotic