HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311560

Details for MGYG000311560, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter surreyensis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter surreyensis
Cluster representative

MGYG000320215

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320215 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311560’s cluster representative genome MGYG000320215 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320215 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311560 Copy API Endpoint
Samples containing this genome

MGYG000311560’s cluster representative (MGYG000320215) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320215’s sequence. Because MGYG000311560 has been clustered with MGYG000320215 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311560.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320215

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Containment Sample accession Animal accession Treatment
0.72 SAMEA10105017 Probiotic
0.71 SAMEA7571790 Prebiotic
0.71 SAMEA9449956 Probiotic
0.70 SAMEA10454443 Probiotic
0.70 SAMEA7571821 Probiotic
0.70 SAMEA10104984 Control
0.70 SAMEA9449952 Probiotic
0.68 SAMEA10159266 Control
0.68 SAMEA10104963 Control
0.68 SAMEA10159250 Probiotic