HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311552

Details for MGYG000311552, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Choladocola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Choladocola
Cluster representative

MGYG000319712

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319712 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311552’s cluster representative genome MGYG000319712 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319712 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311552 Copy API Endpoint
Samples containing this genome

MGYG000311552’s cluster representative (MGYG000319712) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319712’s sequence. Because MGYG000311552 has been clustered with MGYG000319712 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311552.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319712

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Containment Sample accession Animal accession Treatment
0.72 SAMEA10159263 Prebiotic
0.72 SAMEA7025283 Control
0.71 SAMEA7025249 Prebiotic
0.71 SAMEA10104992 Prebiotic
0.71 SAMEA7697613 Prebiotic
0.71 SAMEA10104945 Probiotic
0.71 SAMEA10145583 Control
0.71 SAMEA10455497 Probiotic
0.71 SAMEA7571841 Probiotic
0.71 SAMEA10105045 Control