MGYG000311539

Taxonomy

Merdicola sp001915925 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > Merdicola > Merdicola sp001915925

Cluster representative

MGYG000314365

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314365 on MGnify
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Annotations

MGYG000311539’s cluster representative genome MGYG000314365 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314365 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311539 Copy API Endpoint

MGYG000311539’s cluster representative (MGYG000314365) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314365’s sequence. Because MGYG000311539 has been clustered with MGYG000314365 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311539.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314365

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Containment	Sample accession	Animal accession	Treatment
0.70	SAMEA7697599	SAMEA112904961	Control
0.70	SAMEA7571813	SAMEA112905264	Prebiotic
0.70	SAMEA9449892	SAMEA112905181	Probiotic
0.69	SAMEA9449846	SAMEA112905166	Prebiotic
0.69	SAMEA9449898	SAMEA112905265	Prebiotic
0.69	SAMEA10105010	SAMEA112904968	Prebiotic
0.69	SAMEA14095989	SAMEA112904946	Prebiotic
0.68	SAMEA10105025	SAMEA112904944	Prebiotic
0.68	SAMEA10104990	SAMEA112905160	Prebiotic
0.68	SAMEA10159258	SAMEA112905195	Probiotic