HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311414

Details for MGYG000311414, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimihabitans intestinipullorum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Fimihabitans > Fimihabitans intestinipullorum
Cluster representative

MGYG000317238

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317238 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311414’s cluster representative genome MGYG000317238 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317238 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311414 Copy API Endpoint
Samples containing this genome

MGYG000311414’s cluster representative (MGYG000317238) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317238’s sequence. Because MGYG000311414 has been clustered with MGYG000317238 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311414.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317238

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Containment Sample accession Animal accession Treatment
0.96 SAMEA9449856 Prebiotic
0.96 SAMEA7697586 Prebiotic
0.96 SAMEA10104991 Prebiotic
0.96 SAMEA7571801 Probiotic
0.96 SAMEA9449898 Prebiotic
0.96 SAMEA7722473 Prebiotic
0.95 SAMEA7571778 Control
0.95 SAMEA10105016 Probiotic
0.95 SAMEA7571795 Prebiotic
0.95 SAMEA9449907 Prebiotic