HoloFood Data Portal

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MGYG000311305

Details for MGYG000311305, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000315953

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315953 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311305’s cluster representative genome MGYG000315953 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315953 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311305 Copy API Endpoint
Samples containing this genome

MGYG000311305’s cluster representative (MGYG000315953) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315953’s sequence. Because MGYG000311305 has been clustered with MGYG000315953 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311305.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315953

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Containment Sample accession Animal accession Treatment
0.25 SAMEA7571768 Control
0.25 SAMEA7697637 Prebiotic
0.25 SAMEA7571849 Prebiotic
0.25 SAMEA9449864 Control
0.25 SAMEA7025241 Probiotic
0.25 SAMEA7571832 Control
0.24 SAMEA10104974 Probiotic
0.24 SAMEA10104929 Prebiotic
0.24 SAMEA7571793 Prebiotic
0.24 SAMEA7571814 Prebiotic