HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311280

Details for MGYG000311280, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter excrementipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter excrementipullorum
Cluster representative

MGYG000307883

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307883 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311280’s cluster representative genome MGYG000307883 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307883 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311280 Copy API Endpoint
Samples containing this genome

MGYG000311280’s cluster representative (MGYG000307883) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307883’s sequence. Because MGYG000311280 has been clustered with MGYG000307883 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311280.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307883

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Containment Sample accession Animal accession Treatment
0.91 SAMEA7025247 Probiotic
0.91 SAMEA7025245 Probiotic
0.90 SAMEA7571872 Prebiotic
0.90 SAMEA10145601 Control
0.90 SAMEA7571767 Control
0.90 SAMEA7722473 Prebiotic
0.90 SAMEA7025269 Probiotic
0.90 SAMEA7025246 Probiotic
0.89 SAMEA7025281 Probiotic
0.89 SAMEA7571801 Probiotic