MGYG000311218

Taxonomy

UBA6345 Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > UBA6345

Cluster representative

MGYG000315138

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315138 on MGnify
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Annotations

MGYG000311218’s cluster representative genome MGYG000315138 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315138 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311218 Copy API Endpoint

MGYG000311218’s cluster representative (MGYG000315138) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315138’s sequence. Because MGYG000311218 has been clustered with MGYG000315138 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311218.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315138

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10104973	SAMEA112904987	Probiotic
1.00	SAMEA10454446	SAMEA112904864	Probiotic
1.00	SAMEA7025235	SAMEA112905289	Probiotic
1.00	SAMEA7025241	SAMEA112905244	Probiotic
1.00	SAMEA7697591	SAMEA112904734	Probiotic
1.00	SAMEA7571793	SAMEA112905321	Prebiotic
0.99	SAMEA10455497	SAMEA112905329	Probiotic
0.99	SAMEA10104978	SAMEA112905303	Control
0.99	SAMEA10104941	SAMEA112904809	Probiotic
0.99	SAMEA10104977	SAMEA112905312	Control