MGYG000311009

Taxonomy

Alistipes excrementavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes excrementavium

Cluster representative

MGYG000310170

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310170 on MGnify
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Annotations

MGYG000311009’s cluster representative genome MGYG000310170 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310170 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311009 Copy API Endpoint

MGYG000311009’s cluster representative (MGYG000310170) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310170’s sequence. Because MGYG000311009 has been clustered with MGYG000310170 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311009.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310170

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449854	SAMEA112905061	Prebiotic
1.00	SAMEA7025247	SAMEA112905298	Probiotic
1.00	SAMEA9449888	SAMEA112905144	Probiotic
1.00	SAMEA9449856	SAMEA112905272	Prebiotic
1.00	SAMEA7025248	SAMEA112905319	Probiotic
1.00	SAMEA7697586	SAMEA112904836	Prebiotic
1.00	SAMEA7571790	SAMEA112905026	Prebiotic
1.00	SAMEA10455485	SAMEA112904918	Control
1.00	SAMEA7025238	SAMEA112905325	Probiotic
1.00	SAMEA9449834	SAMEA112905073	Probiotic