HoloFood Data Portal

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MGYG000310895

Details for MGYG000310895, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerotruncus colihominis Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Anaerotruncus > Anaerotruncus colihominis
Cluster representative

MGYG000316441

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316441 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310895’s cluster representative genome MGYG000316441 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316441 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310895 Copy API Endpoint
Samples containing this genome

MGYG000310895’s cluster representative (MGYG000316441) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316441’s sequence. Because MGYG000310895 has been clustered with MGYG000316441 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310895.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316441

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Containment Sample accession Animal accession Treatment
0.23 SAMEA9449864 Control
0.22 SAMEA10455487 Control
0.22 SAMEA7571840 Probiotic
0.22 SAMEA10159265 Probiotic
0.22 SAMEA10104997 Prebiotic
0.22 SAMEA9449836 Probiotic
0.22 SAMEA10145597 Control
0.22 SAMEA9449877 Control
0.21 SAMEA9449927 Prebiotic
0.21 SAMEA10145576 Control