HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310730

Details for MGYG000310730, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimimonas gallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > Fimimonas > Fimimonas gallinarum
Cluster representative

MGYG000309765

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309765 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310730’s cluster representative genome MGYG000309765 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309765 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310730 Copy API Endpoint
Samples containing this genome

MGYG000310730’s cluster representative (MGYG000309765) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309765’s sequence. Because MGYG000310730 has been clustered with MGYG000309765 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310730.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309765

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Containment Sample accession Animal accession Treatment
0.84 SAMEA9449854 Prebiotic
0.80 SAMEA9449907 Prebiotic
0.80 SAMEA7571806 Control
0.79 SAMEA9449885 Control
0.79 SAMEA7025247 Probiotic
0.79 SAMEA7697616 Probiotic
0.78 SAMEA7571801 Probiotic
0.77 SAMEA7025241 Probiotic
0.77 SAMEA10145564 Control
0.76 SAMEA7025246 Probiotic