HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310553

Details for MGYG000310553, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ligilactobacillus aviarius Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Ligilactobacillus > Ligilactobacillus aviarius
Cluster representative

MGYG000318110

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318110 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310553’s cluster representative genome MGYG000318110 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318110 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310553 Copy API Endpoint
Samples containing this genome

MGYG000310553’s cluster representative (MGYG000318110) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318110’s sequence. Because MGYG000310553 has been clustered with MGYG000318110 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310553.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318110

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.77 SAMEA10130056 Probiotic
0.77 SAMEA10145563 Control
0.77 SAMEA7571801 Probiotic
0.76 SAMEA10130029 Prebiotic
0.76 SAMEA7571810 Prebiotic
0.76 SAMEA7368177 Probiotic
0.76 SAMEA7697576 Prebiotic
0.76 SAMEA9449943 Control
0.76 SAMEA7722473 Prebiotic
0.76 SAMEA7368181 Probiotic