HoloFood Data Portal

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MGYG000310351

Details for MGYG000310351, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gemmiger stercoripullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger stercoripullorum
Cluster representative

MGYG000307915

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307915 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310351’s cluster representative genome MGYG000307915 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307915 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310351 Copy API Endpoint
Samples containing this genome

MGYG000310351’s cluster representative (MGYG000307915) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307915’s sequence. Because MGYG000310351 has been clustered with MGYG000307915 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310351.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307915

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Containment Sample accession Animal accession Treatment
0.74 SAMEA7722473 Prebiotic
0.74 SAMEA7025269 Probiotic
0.74 SAMEA7025258 Probiotic
0.74 SAMEA7571849 Prebiotic
0.74 SAMEA10104915 Control
0.73 SAMEA9449928 Prebiotic
0.73 SAMEA7571821 Probiotic
0.72 SAMEA9449862 Prebiotic
0.72 SAMEA10104928 Prebiotic
0.72 SAMEA9449873 Prebiotic