HoloFood Data Portal

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MGYG000310319

Details for MGYG000310319, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313735

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313735 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310319’s cluster representative genome MGYG000313735 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313735 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310319 Copy API Endpoint
Samples containing this genome

MGYG000310319’s cluster representative (MGYG000313735) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313735’s sequence. Because MGYG000310319 has been clustered with MGYG000313735 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310319.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313735

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Containment Sample accession Animal accession Treatment
0.99 SAMEA9449895 Probiotic
0.98 SAMEA10104990 Prebiotic
0.98 SAMEA10455479 Prebiotic
0.98 SAMEA9449894 Probiotic
0.98 SAMEA10104991 Prebiotic
0.98 SAMEA9449907 Prebiotic
0.98 SAMEA9449856 Prebiotic
0.98 SAMEA10104923 Control
0.98 SAMEA10455486 Control
0.98 SAMEA7697617 Prebiotic