MGYG000310158

Taxonomy

Mediterraneibacter avicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter avicola

Cluster representative

MGYG000319122

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319122 on MGnify
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Annotations

MGYG000310158’s cluster representative genome MGYG000319122 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319122 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310158 Copy API Endpoint

MGYG000310158’s cluster representative (MGYG000319122) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319122’s sequence. Because MGYG000310158 has been clustered with MGYG000319122 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310158.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319122

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571827	SAMEA112905382	Probiotic
1.00	SAMEA9449928	SAMEA112904898	Prebiotic
1.00	SAMEA7571832	SAMEA112905299	Control
1.00	SAMEA7571767	SAMEA112905143	Control
1.00	SAMEA10104915	SAMEA112904820	Control
1.00	SAMEA7025281	SAMEA112904979	Probiotic
1.00	SAMEA7025239	SAMEA112905167	Probiotic
0.99	SAMEA7025240	SAMEA112904911	Probiotic
0.99	SAMEA7571870	SAMEA112905255	Prebiotic
0.99	SAMEA9449913	SAMEA112904827	Probiotic