HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310133

Details for MGYG000310133, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
RUG14156 Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > RUG14156
Cluster representative

MGYG000317141

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317141 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310133’s cluster representative genome MGYG000317141 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317141 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310133 Copy API Endpoint
Samples containing this genome

MGYG000310133’s cluster representative (MGYG000317141) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317141’s sequence. Because MGYG000310133 has been clustered with MGYG000317141 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310133.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317141

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.40 SAMEA7697616 Probiotic
0.40 SAMEA7025246 Probiotic
0.37 SAMEA7697618 Prebiotic
0.36 SAMEA10159244 Probiotic
0.35 SAMEA7025275 Probiotic
0.34 SAMEA7025236 Probiotic
0.33 SAMEA10105067 Prebiotic
0.32 SAMEA7571863 Probiotic
0.32 SAMEA9449833 Probiotic
0.32 SAMEA10455477 Probiotic