HoloFood Data Portal

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MGYG000309763

Details for MGYG000309763, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000320426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320426 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309763’s cluster representative genome MGYG000320426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320426 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309763 Copy API Endpoint
Samples containing this genome

MGYG000309763’s cluster representative (MGYG000320426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320426’s sequence. Because MGYG000309763 has been clustered with MGYG000320426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309763.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320426

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Containment Sample accession Animal accession Treatment
0.32 SAMEA10130076 Prebiotic
0.30 SAMEA7697601 Prebiotic
0.28 SAMEA7571867 Control
0.28 SAMEA10105073 Prebiotic
0.27 SAMEA9449898 Prebiotic
0.26 SAMEA10105003 Prebiotic
0.26 SAMEA9449917 Probiotic
0.25 SAMEA7571764 Control
0.25 SAMEA9449858 Probiotic
0.24 SAMEA10104957 Control