MGYG000309711

Taxonomy

Caccovivens sp900557645 Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens > Caccovivens sp900557645

Cluster representative

MGYG000312111

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312111 on MGnify
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Annotations

MGYG000309711’s cluster representative genome MGYG000312111 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312111 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309711 Copy API Endpoint

MGYG000309711’s cluster representative (MGYG000312111) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312111’s sequence. Because MGYG000309711 has been clustered with MGYG000312111 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309711.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312111

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA7697598	SAMEA112905174	Control
0.20	SAMEA7571802	SAMEA112905125	Control