MGYG000309622

Taxonomy

Ligilactobacillus salivarius Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Ligilactobacillus > Ligilactobacillus salivarius

Cluster representative

MGYG000309419

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309419 on MGnify
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Annotations

MGYG000309622’s cluster representative genome MGYG000309419 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309419 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309622 Copy API Endpoint

MGYG000309622’s cluster representative (MGYG000309419) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309419’s sequence. Because MGYG000309622 has been clustered with MGYG000309419 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309622.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309419

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Containment	Sample accession	Animal accession	Treatment
0.99	SAMEA10130023	SAMEA112904804	Control
0.99	SAMEA10130043	SAMEA112905294	Control
0.99	SAMEA10130041	SAMEA112905286	Prebiotic
0.98	SAMEA10130110	SAMEA112905283	Control
0.98	SAMEA10130122	SAMEA112905103	Prebiotic
0.98	SAMEA10130099	SAMEA112905256	Probiotic
0.98	SAMEA10130072	SAMEA112905047	Prebiotic
0.98	SAMEA10130019	SAMEA112904755	Control
0.98	SAMEA9449907	SAMEA112905341	Prebiotic
0.98	SAMEA7025276	SAMEA112904795	Control