HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309518

Details for MGYG000309518, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas
Cluster representative

MGYG000318993

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318993 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309518’s cluster representative genome MGYG000318993 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318993 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309518 Copy API Endpoint
Samples containing this genome

MGYG000309518’s cluster representative (MGYG000318993) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318993’s sequence. Because MGYG000309518 has been clustered with MGYG000318993 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309518.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318993

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Containment Sample accession Animal accession Treatment
0.86 SAMEA7571790 Prebiotic
0.86 SAMEA10104978 Control
0.85 SAMEA10105016 Probiotic
0.85 SAMEA7571819 Probiotic
0.85 SAMEA10104971 Probiotic
0.85 SAMEA7697576 Prebiotic
0.84 SAMEA7571772 Prebiotic
0.84 SAMEA7025258 Probiotic
0.84 SAMEA7697597 Probiotic
0.83 SAMEA9449884 Control