HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309377

Details for MGYG000309377, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Avoscillospira stercoripullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Avoscillospira > Avoscillospira stercoripullorum
Cluster representative

MGYG000311133

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311133 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309377’s cluster representative genome MGYG000311133 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311133 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309377 Copy API Endpoint
Samples containing this genome

MGYG000309377’s cluster representative (MGYG000311133) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311133’s sequence. Because MGYG000309377 has been clustered with MGYG000311133 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309377.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311133

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Containment Sample accession Animal accession Treatment
1.00 SAMEA9449927 Prebiotic
1.00 SAMEA9449895 Probiotic
0.99 SAMEA7571804 Prebiotic
0.99 SAMEA9449928 Prebiotic
0.99 SAMEA7571797 Control
0.99 SAMEA7025283 Control
0.99 SAMEA7571800 Probiotic
0.99 SAMEA7697633 Prebiotic
0.99 SAMEA10159262 Prebiotic
0.99 SAMEA9449833 Probiotic