HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309371

Details for MGYG000309371, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecenecus gallistercoris Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Faecenecus > Faecenecus gallistercoris
Cluster representative

MGYG000315127

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315127 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309371’s cluster representative genome MGYG000315127 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315127 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309371 Copy API Endpoint
Samples containing this genome

MGYG000309371’s cluster representative (MGYG000315127) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315127’s sequence. Because MGYG000309371 has been clustered with MGYG000315127 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309371.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315127

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Containment Sample accession Animal accession Treatment
0.91 SAMEA9449907 Prebiotic
0.91 SAMEA7025269 Probiotic
0.91 SAMEA7571863 Probiotic
0.91 SAMEA7571861 Control
0.91 SAMEA7025238 Probiotic
0.91 SAMEA7025239 Probiotic
0.91 SAMEA10104963 Control
0.91 SAMEA7025236 Probiotic
0.90 SAMEA9449868 Control
0.90 SAMEA7571778 Control