HoloFood Data Portal

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MGYG000309332

Details for MGYG000309332, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Copromonas sp900541255 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Copromonas > Copromonas sp900541255
Cluster representative

MGYG000314258

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314258 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309332’s cluster representative genome MGYG000314258 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314258 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309332 Copy API Endpoint
Samples containing this genome

MGYG000309332’s cluster representative (MGYG000314258) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314258’s sequence. Because MGYG000309332 has been clustered with MGYG000314258 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309332.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314258

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Containment Sample accession Animal accession Treatment
0.23 SAMEA9449870 Prebiotic
0.23 SAMEA9449923 Probiotic
0.22 SAMEA7571872 Prebiotic
0.22 SAMEA7697579 Control
0.22 SAMEA7571780 Control
0.22 SAMEA10104988 Control
0.22 SAMEA10105072 Prebiotic
0.22 SAMEA7571829 Prebiotic
0.22 SAMEA10104985 Control
0.21 SAMEA9449831 Control