HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309211

Details for MGYG000309211, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccomorpha excrementavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Caccomorpha > Caccomorpha excrementavium
Cluster representative

MGYG000312197

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312197 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309211’s cluster representative genome MGYG000312197 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312197 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309211 Copy API Endpoint
Samples containing this genome

MGYG000309211’s cluster representative (MGYG000312197) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312197’s sequence. Because MGYG000309211 has been clustered with MGYG000312197 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309211.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312197

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Containment Sample accession Animal accession Treatment
0.31 SAMEA10105045 Control
0.29 SAMEA10454438 Probiotic
0.28 SAMEA9449833 Probiotic
0.28 SAMEA9449855 Probiotic
0.26 SAMEA9449910 Probiotic
0.26 SAMEA7025256 Prebiotic
0.22 SAMEA10145570 Control
0.22 SAMEA10105056 Prebiotic
0.21 SAMEA10105072 Prebiotic