HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309091

Details for MGYG000309091, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma avicola Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma avicola
Cluster representative

MGYG000314257

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314257 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309091’s cluster representative genome MGYG000314257 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314257 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309091 Copy API Endpoint
Samples containing this genome

MGYG000309091’s cluster representative (MGYG000314257) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314257’s sequence. Because MGYG000309091 has been clustered with MGYG000314257 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309091.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314257

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Containment Sample accession Animal accession Treatment
0.64 SAMEA7571775 Control
0.64 SAMEA9449907 Prebiotic
0.64 SAMEA7025258 Probiotic
0.64 SAMEA10105013 Control
0.64 SAMEA9449950 Prebiotic
0.64 SAMEA9449862 Prebiotic
0.64 SAMEA7025266 Probiotic
0.64 SAMEA7025281 Probiotic
0.64 SAMEA10454449 Prebiotic
0.64 SAMEA9449858 Probiotic