HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309030

Details for MGYG000309030, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Dysosmobacter Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Dysosmobacter
Cluster representative

MGYG000316966

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316966 on MGnify
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Annotations

MGYG000309030’s cluster representative genome MGYG000316966 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316966 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309030 Copy API Endpoint
Samples containing this genome

MGYG000309030’s cluster representative (MGYG000316966) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316966’s sequence. Because MGYG000309030 has been clustered with MGYG000316966 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309030.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316966

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Containment Sample accession Animal accession Treatment
0.34 SAMEA9449874 Prebiotic
0.34 SAMEA7025256 Prebiotic
0.34 SAMEA9449946 Prebiotic
0.33 SAMEA9449909 Prebiotic
0.33 SAMEA10455502 Probiotic
0.33 SAMEA10105040 Control
0.33 SAMEA9449879 Probiotic
0.32 SAMEA10455493 Probiotic
0.32 SAMEA10105029 Probiotic
0.32 SAMEA7571800 Probiotic