HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308989

Details for MGYG000308989, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Dysosmobacter Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Dysosmobacter
Cluster representative

MGYG000308989

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308989 on MGnify
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Annotations

MGYG000308989’s cluster representative genome MGYG000308989 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308989 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308989 Copy API Endpoint
Samples containing this genome

MGYG000308989’s cluster representative (MGYG000308989) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308989’s sequence. Because MGYG000308989 has been clustered with MGYG000308989 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308989.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308989

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Containment Sample accession Animal accession Treatment
0.33 SAMEA7571868 Prebiotic
0.32 SAMEA7571800 Probiotic
0.32 SAMEA10105021 Probiotic
0.32 SAMEA9449888 Probiotic
0.32 SAMEA9449899 Prebiotic
0.32 SAMEA10104985 Control
0.32 SAMEA10104988 Control
0.32 SAMEA7697623 Probiotic
0.32 SAMEA7571870 Prebiotic
0.32 SAMEA10104923 Control