HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308913

Details for MGYG000308913, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enterocloster excrementipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Enterocloster > Enterocloster excrementipullorum
Cluster representative

MGYG000314145

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314145 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308913’s cluster representative genome MGYG000314145 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314145 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308913 Copy API Endpoint
Samples containing this genome

MGYG000308913’s cluster representative (MGYG000314145) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314145’s sequence. Because MGYG000308913 has been clustered with MGYG000314145 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308913.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314145

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Containment Sample accession Animal accession Treatment
0.28 SAMEA9449855 Probiotic
0.28 SAMEA9449942 Control
0.27 SAMEA9449897 Control
0.26 SAMEA10159260 Control
0.26 SAMEA9449961 Control
0.26 SAMEA7368182 Prebiotic
0.26 SAMEA10105057 Control
0.26 SAMEA10105014 Probiotic
0.25 SAMEA10105048 Control
0.25 SAMEA10145593 Control