HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308887

Details for MGYG000308887, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Bacteroides clarus Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides clarus
Cluster representative

MGYG000313360

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313360 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308887’s cluster representative genome MGYG000313360 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313360 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308887 Copy API Endpoint
Samples containing this genome

MGYG000308887’s cluster representative (MGYG000313360) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313360’s sequence. Because MGYG000308887 has been clustered with MGYG000313360 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308887.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313360

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Containment Sample accession Animal accession Treatment
0.54 SAMEA10454449 Prebiotic
0.52 SAMEA7025285 Control
0.46 SAMEA10105041 Probiotic
0.44 SAMEA7697626 Probiotic
0.44 SAMEA10105056 Prebiotic
0.41 SAMEA7571801 Probiotic
0.38 SAMEA7025283 Control
0.35 SAMEA7025277 Control
0.34 SAMEA7025282 Control
0.33 SAMEA9449943 Control